1. Oliveira C, Sousa S, Pinheiro H, Karam R, Bordeira-Carriço R, Senz J, Kaurah P, Carvalho J, Pereira R, Gusmão L, Wen X, Cipriano MA, Yokota J, Carneiro F, Huntsman D, Seruca R

Quantification of epigenetic and genetic 2nd hits in CDH1 during hereditary diffuse gastric cancer syndrome progression. Gastroenterology 136: 2137-48, 2009.  [Article] 

 doi: 10.1053/j.gastro.2009.02.065 PMID: 19269290.

 

2. Santos NP, Ribeiro-Rodrigues EM, Ribeiro-Dos-Santos AK, Pereira R, Gusmão L, Amorim A, Guerreiro JF, Zago MA, Matte C, Hutz MH, Santos SE

Assessing individual interethnic admixture and population substructure using a 48-insertion-deletion (INSEL) ancestry-informative marker (AIM) panel. Human mutation 31: 184-90, 2010.  [Article] 

 doi: 10.1002/humu.21159 PMID: 19953531.

 

3. Alves C, Pereira R, Prieto L, Aler M, Amaral CR, Arévalo C, Berardi G, Di Rocco F, Caputo M, Carmona CH, Catelli L, Costa HA, Coufalova P, Furfuro S, García Ó, Gaviria A, Goios A, Gómez JJ, Hernández A, Hernández ED, Miranda L, Parra D, Pedrosa S, Porto MJ, Rebelo ML, Spirito M, Torres MD, Amorim A, Pereira F

Species identification in forensic samples using the SPInDel approach: A GHEP-ISFG inter-laboratory collaborative exercise. Forensic science international. Genetics 28: 219-224, 2017.  [Article] 

 doi: 10.1016/j.fsigen.2017.03.003 PMID: 28324847.

 

4. Ferragut JF, Bentayebi K, Pereira R, Castro JA, Amorim A, Ramon C, Picornell A

Genetic portrait of Jewish populations based on three sets of X-chromosome markers: Indels, Alu insertions and STRs. Forensic science international. Genetics 31: e5-e11, 2017.  [Article] 

 doi: 10.1016/j.fsigen.2017.09.008 PMID: 28951006.

 

5. Pereira R, Alves C, Aler M, Amorim A, Arévalo C, Betancor E, Braganholi D, Bravo ML, Brito P, Builes JJ, Burgos G, Carvalho EF, Castillo A, Catanesi CI, Cicarelli RMB, Coufalova P, Dario P, D'Amato ME, Davison S, Ferragut J, Fondevila M, Furfuro S, García O, Gaviria A, Gomes I, González E, Gonzalez-Liñan A, Gross TE, Hernández A, Huang Q, Jiménez S, Jobim LF, López-Parra AM, Marino M, Marques S, Martínez-Cortés G, Masciovecchio V, Parra D, Penacino G, Pinheiro MF, Porto MJ, Posada Y, Restrepo C, Ribeiro T, Rubio L, Sala A, Santurtún A, Solís LS, Souto L, Streitemberger E, Torres A, Vilela-Lamego C, Yunis JJ, Yurrebaso I, Gusmão L

A GHEP-ISFG collaborative study on the genetic variation of 38 autosomal indels for human identification in different continental populations. Forensic science international. Genetics 32: 18-25, 2018.  [Article] 

 doi: 10.1016/j.fsigen.2017.09.012 PMID: 29024923.

 

6. Fernandes GC, Michelli RA, Galvão HC, Paula AE, Pereira R, Andrade CE, Felicio PS, Souza CP, Mendes DR, Volc S, Berardinelli GN, Grasel RS, Sabato CS, Viana DV, Mauad EC, Scapulatempo-Neto C, Arun B, Reis RM, Palmero EI

Prevalence of BRCA1/BRCA2 mutations in a Brazilian population sample at-risk for hereditary breast cancer and characterization of its genetic ancestry. Oncotarget 7: 80465-80481, 2016.  [Article] 

 doi: 10.18632/oncotarget.12610 PMID: 27741520.

 

7. Gomes V, Pala M, Salas A, Álvarez-Iglesias V, Amorim A, Gómez-Carballa A, Carracedo Á, Clarke DJ, Hill C, Mormina M, Shaw MA, Dunne DW, Pereira R, Pereira V, Prata MJ, Sánchez-Diz P, Rito T, Soares P, Gusmão L, Richards MB

Mosaic maternal ancestry in the Great Lakes region of East Africa. Human genetics 134: 1013-27, 2015.  [Article] 

 doi: 10.1007/s00439-015-1583-0 PMID: 26188410.

 

8. Romanini C, Romero M, Salado Puerto M, Catelli L, Phillips C, Pereira R, Gusmão L, Vullo C

Ancestry informative markers: Inference of ancestry in aged bone samples using an autosomal AIM-Indel multiplex. Forensic science international. Genetics 16: 58-63, 2015.  [Article] 

 doi: 10.1016/j.fsigen.2014.11.025 PMID: 25531060.

 

9. Santos C, Phillips C, Oldoni F, Amigo J, Fondevila M, Pereira R, Carracedo Á, Lareu MV

Completion of a worldwide reference panel of samples for an ancestry informative Indel assay. Forensic science international. Genetics 17: 75-80, 2015.  [Article] 

 doi: 10.1016/j.fsigen.2015.03.011 PMID: 25840342.

 

10. Martínez-Cortés G, Gusmão L, Pereira R, Salcido VH, Favela-Mendoza AF, Muñoz-Valle JF, Inclán-Sánchez A, López-Hernández LB, Rangel-Villalobos H

Genetic structure and forensic parameters of 38 Indels for human identification purposes in eight Mexican populations. Forensic science international. Genetics 17: 149-52, 2015.  [Article] 

 doi: 10.1016/j.fsigen.2015.04.011 PMID: 25988907.

 

11. Machado P, Pereira R, Rocha AM, Manco L, Fernandes N, Miranda J, Ribeiro L, do Rosário VE, Amorim A, Gusmão L, Arez AP

Malaria: looking for selection signatures in the human PKLR gene region. British journal of haematology 149: 775-84, 2010.  [Article] 

 doi: 10.1111/j.1365-2141.2010.08165.x PMID: 20377593.

 

12. Campanella NC, Berardinelli GN, Scapulatempo-Neto C, Viana D, Palmero EI, Pereira R, Reis RM

Optimization of a pentaplex panel for MSI analysis without control DNA in a Brazilian population: correlation with ancestry markers. European journal of human genetics : EJHG 22: 875-80, 2014.  [Article] 

 doi: 10.1038/ejhg.2013.256 PMID: 24193342.

 

13. Oliveira E, Pereira R, Amorim A, McLeod H, Prata MJ

Patterns of pharmacogenetic diversity in African populations: role of ancient and recent history. Pharmacogenomics 10: 1413-22, 2009.  [Article] 

 doi: 10.2217/pgs.09.74 PMID: 19761365.

 

14. Romanini C, Catelli ML, Borosky A, Pereira R, Romero M, Salado Puerto M, Phillips C, Fondevila M, Freire A, Santos C, Carracedo A, Lareu MV, Gusmao L, Vullo CM

Typing short amplicon binary polymorphisms: supplementary SNP and Indel genetic information in the analysis of highly degraded skeletal remains. Forensic science international. Genetics 6: 469-76, 2012.  [Article] 

 doi: 10.1016/j.fsigen.2011.10.006 PMID: 22119420.

 

15. Manta F, Caiafa A, Pereira R, Silva D, Amorim A, Carvalho EF, Gusmão L

Indel markers: genetic diversity of 38 polymorphisms in Brazilian populations and application in a paternity investigation with post mortem material. Forensic science international. Genetics 6: 658-61, 2012.  [Article] 

 doi: 10.1016/j.fsigen.2011.12.008 PMID: 22277257.

 

16. Pereira R, Phillips C, Pinto N, Santos C, Dos Santos SE, Amorim A, Carracedo A, Gusmão L

Straightforward Inference of Ancestry and Admixture Proportions through Ancestry-Informative Insertion Deletion Multiplexing. PloS one 7: e29684, 2012.  [Article] 

 PMID: 22272242.

 

17. van Asch B, Pinheiro R, Pereira R, Alves C, Pereira V, Pereira F, Gusmão L, Amorim A

A framework for the development of STR genotyping in domestic animal species: characterization and population study of 12 canine X-chromosome loci. Electrophoresis 31: 303-8, 2010.  [Article] 

 doi: 10.1002/elps.200900389 PMID: 20024924.

 

18. Saloum de Neves Manta F, Pereira R, Vianna R, Rodolfo Beuttenmüller de Araújo A, Leite Góes Gitaí D, Aparecida da Silva D, de Vargas Wolfgramm E, da Mota Pontes I, Ivan Aguiar J, Ozório Moraes M, Fagundes de Carvalho E, Gusmão L

Revisiting the genetic ancestry of Brazilians using autosomal AIM-Indels. PloS one 8: e75145, 2013.  [Article] 

 doi: 10.1371/journal.pone.0075145 PMID: 24073242.

 

19. Ibarra A, Restrepo T, Rojas W, Castillo A, Amorim A, Martínez B, Burgos G, Ostos H, Alvarez K, Camacho M, Suarez Z, Pereira R, Gusmão L

Evaluating the x chromosome-specific diversity of colombian populations using insertion/deletion polymorphisms. PloS one 9: e87202, 2014.  [Article] 

 doi: 10.1371/journal.pone.0087202 PMID: 24498042.

 

20. Pinto N, Magalhães M, Conde-Sousa E, Gomes C, Pereira R, Alves C, Gusmão L, Amorim A

Assessing paternities with inconclusive STR results: The suitability of bi-allelic markers. Forensic science international. Genetics 7: 16-21, 2013.  [Article] 

 doi: 10.1016/j.fsigen.2012.05.002 PMID: 22658886.

 

21. Martínez B, Builes JJ, Gaviria A, Burgos G, Manrique A, Aguirre DP, Mendonza L, Bravo MLI, Pereira R, Gusmão L, Marrugo J

Population genetic data of 38 autosomal InDels in San Basilio de Palenque, the first free town in America Forensic science international. Genetics 4: e73-e74, 2013.  [] 

 doi: 10.1016/j.fsigss.2013.10.037.

 

22. Builes JJ, Ospino JM, Manrique A, Aguirre DP, Mendoza L, Bravo MLI, Pereira R, Gusmão L

Genetic population data of 38 autosomal InDels for the Amerindian community Embera-Chami of Lapo, Antioquia-Colombia Forensic science international. Genetics 4: e170-e171, 2013.  [] 

 doi: 10.1016/j.fsigss.2013.10.088.

 

23. Zaumsegel D, Pereira R, Rothschil MA, Phillips C, Gusmão L, Schneider PM, EUROFORGEN-NoE Consortium

Comparative Analysis of Two Indel-based Ancestry Informative Multiplex PCR Typing Kits Forensic science international. Genetics 4: e21-e22, 2013.  [] 

 doi: 10.1016/j.fsigss.2013.10.010.

 

24. van Asch B, Pereira R, Carneiro J, Amorim A

Population assignment in seven Portuguese dog breeds and Iberian wolves Forensic science international. Genetics  556-557, 2011.  [] 

 doi: 10.1016/j.fsigss.2011.10.019.

 

25. Magalhães M, Pinto N, Gomes C, Pereira R, Amorim A, Alves C, Gusmão L

When the alleged father is a close relative of the real father: the utility of insertion/deletion
polymorphisms Forensic science international. Genetics  1, 2011.  [] 

 doi: 10.1016/j.fsigss.2011.08.004.

 

26. Pereira R, Phillips C, Alves C, Amorim A, Carracedo A, Gusmão L

A new multiplex for human identification using insertion/deletion polymorphisms. Electrophoresis 30: 3682-90, 2009.  [Article] 

 doi: 10.1002/elps.200900274 PMID: 19862748.

 

27. Gomes I, Prinz M, Pereira R, Meyers C, Mikulasovich RS, Amorim A, Carracedo A, Gusmão L

Genetic analysis of three US population groups using an X-chromosomal STR decaplex. International journal of legal medicine 121: 198-203, 2007.  [Article] 

 doi: 10.1007/s00414-006-0146-2 PMID: 17237948.

 

28. Pereira R, Gomes I, Amorim A, Gusmão L

Genetic diversity of 10 X chromosome STRs in northern Portugal. International journal of legal medicine 121: 192-7, 2007.  [Article] 

 doi: 10.1007/s00414-006-0144-4 PMID: 17206433.

 

29. Gomes I, Prinz M, Pereira R, Bieschke E, Mayr WR, Amorim A, Carracedo A, Gusmão L

X-chromosome STR sequence variation, repeat structure, and nomenclature in humans and chimpanzees. International journal of legal medicine 123: 143-9, 2009.  [Article] 

 doi: 10.1007/s00414-008-0303-x PMID: 19082840.

 

30. Gomes I, Pereira R, Mayr WR, Amorim A, Carracedo A, Gusmão L

Evaluation of DXS9902, DXS7132, DXS6809, DXS7133, and DXS7423 in humans and chimpanzees: sequence variation, repeat structure, and nomenclature. International journal of legal medicine 123: 403-12, 2009.  [Article] 

 doi: 10.1007/s00414-009-0357-4 PMID: 19536558.

 

31. Fondevila M, Phillips C, Santos C, Pereira R, Gusmão L, Carracedo A, Butler JM, Lareu MV, Vallone PM

Forensic performance of two insertion-deletion marker assays. International journal of legal medicine 126: 725-37, 2012.  [Article] 

 doi: 10.1007/s00414-012-0721-7 PMID: 22714117.

 

32. Pereira R, Pereira V, Gomes I, Tomas C, Morling N, Amorim A, Prata MJ, Carracedo A, Gusmão L

A method for the analysis of 32 X chromosome insertion deletion polymorphisms in a single PCR. International journal of legal medicine 126: 97-105, 2012.  [Article] 

 doi: 10.1007/s00414-011-0593-2 PMID: 21717151.

 

33. Pereira V, Gusmão L, Valente C, Pereira R, Carneiro J, Gomes I, Morling N, Amorim A, João Prata M

Refining the genetic portrait of Portuguese Roma through X-chromosomal markers. American journal of physical anthropology 148: 389-94, 2012.  [Article] 

 doi: 10.1002/ajpa.22061 PMID: 22576185.

 

34. Pereira R, Phillips C, Alves C, Amorim A, Carracedo A, Gusmão L

Insertion/deletion polymorphisms: A multiplex assay and forensic applications Forensic science international. Genetics  1875-1768, 2009.  [] 

 doi: 10.1016/j.fsigss.2009.09.005.

 

35. Ribeiro-Rodrigues EM, dos Santos NP, dos Santos AK, Pereira R, Amorim A, Gusmão L, Zago MA, dos Santos SE

Assessing interethnic admixture using an X-linked insertion-deletion multiplex. American journal of human biology : the official journal of the Human Biology Council 21: 707-9, 2009.  [Article] 

 doi: 10.1002/ajhb.20950 PMID: 19533621.

 

36. Silva F, Pereira R, Gusmão L, Santos C, Amorim A, Prata MJ, Bettencourt C, Lourenço P, Lima M

Genetic profiling of the Azores Islands (Portugal): data from 10 X-chromosome STRs. American journal of human biology : the official journal of the Human Biology Council 22: 221-3, 2010.  [Article] 

 doi: 10.1002/ajhb.20971 PMID: 19593741.

 

37. Pereira R, Fondevila M, Phillips C, Amorim A, Carracedo A, Gusmão L

Genetic characterization of 52 autosomal SNPs in the Portuguese population Forensic science international. Genetics  358-360, 2008.  [] 

 doi: 10.1016/j.fsigss.2007.10.160.

 

38. Gomes I, Pereira R, Amorim A, Prinz M, Bieschke E, Carracedo A, Gusmão L

Sequence variation at three X chromosomal short tandem repeats in Caucasian and African populations Forensic science international. Genetics  147-149, 2008.  [] 

 doi: 10.1016/j.fsigss.2007.10.097.

 

39. Pereira R, Fondevilda M, Phillips C, Amorim A, Carracedo A, Gusmão L

Genetic characterization of 52 autosomal SNPs in two sub-Saharan African populations Forensic science international. Genetics  361-363, 2008.  [] 

 doi: 10.1016/j.fsigss.2007.10.155.

 

40. Manta FS, Pereira R, Caiafa A, Silva DA, Gusmão L, Carvalho EF

Analysis of genetic ancestry in the admixed Brazilian population from Rio de Janeiro using 46 autosomal ancestry-informative indel markers. Annals of human biology 40: 94-8, 2013.  [Article] 

 doi: 10.3109/03014460.2012.742138 PMID: 23151124.

 

41. Gomes I, Alves C, Maxzud K, Pereira R, Prata MJ, Sánchez-Diz P, Carracedo A, Amorim A, Gusmão L

Analysis of 10 X-STRs in three African Populations. Forensic science international. Genetics 1: 208-211, 2007.  [Article; Proceedings Paper] 

.

 

42. Alves C, Pereira R, Prieto L, Amorim A, Pereira F

Results of the GHEP-ISFG collaborative exercise for the taxonomic identification of forensic samples using the SPInDel method Forensic science international. Genetics Supplement Series 5: E184-E185, 2015.  [Article] 

.

 

43. Magalhaes MCA, Amorim A, Gusmao L, Gorostiza A, Gonzalez-Martin A, Pereira R

Autosomal indels distribution in Metropolitan Manila, Philippines Forensic science international. Genetics Supplement Series 5: E451-E453, 2015.  [Article] 

 doi: 10.1016/j.fsigss.2015.09.179.

 

44. Pereira R, Gusmão L

Capillary electrophoresis of 38 non-coding biallelic mini-Indels for degraded samples and as complementary tool in paternity testing Methods in molecular biology (Clifton, N.J.)  1, 2012.  [] 

 doi: 10.1007/978-1-61779-461-2.

 

45. Martinez B., Pereira R., Meza K., Hernandez L., Amorim A., Marrugo J., Gusmão L.

Ancestry estimates in afrodescendant population from San Basilio de Palenque, Colombia Forensic science international. Genetics Supplement Series 6: E224-E225, 2017.  [Article] 

 doi: 10.1016/j.fsigss.2017.09.105.